Simulation of large-scale rule-based models

نویسندگان
چکیده

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Simulation of large-scale rule-based models

MOTIVATION Interactions of molecules, such as signaling proteins, with multiple binding sites and/or multiple sites of post-translational covalent modification can be modeled using reaction rules. Rules comprehensively, but implicitly, define the individual chemical species and reactions that molecular interactions can potentially generate. Although rules can be automatically processed to defin...

متن کامل

Fast Simulation of Large-Scale Growth Models

We give an algorithm that computes the final state of certain growth models without computing all intermediate states. Our technique is based on a “least action principle” which characterizes the odometer function of the growth process. Starting from an approximation for the odometer, we successively correct underand overestimates and provably arrive at the correct final state. The degree of sp...

متن کامل

Nieme - Large-Scale Energy-Based Models Nieme: Large-Scale Energy-Based Models

In this paper we introduce Nieme, a machine learning library for large-scale classification, regression and ranking. Nieme relies on the framework of energy-based models (LeCun et al., 2006) which unifies several learning algorithms ranging from simple perceptrons to recent models such as the pegasos support vector machine or l1-regularized maximum entropy models. This framework also unifies ba...

متن کامل

Large-scale Agent-based Modeling and Simulation

This research presents a method to build large-scale agent-based modeling and simulation on PC for large-scale social systems with complex social networks. The novelty of this method is reflected in both designing of individual agent and organizing a group of agents for interactions on a large scale. As a case study, we constructed a large-scale artificial city Beijing, on which to test policie...

متن کامل

Distributed Simulation of Large-Scale Individual Oriented Models

The distributed simulation for high performance models has been carried-out into a very useful and low-cost tool. In the present work their application to an individual oriented model (Fish Schools) is analyzed. To do this, it was analyzed different alternatives for this type of simulation and their application to obtain performance and model scalability using different implementation. Thus, tw...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Bioinformatics

سال: 2009

ISSN: 1460-2059,1367-4803

DOI: 10.1093/bioinformatics/btp066